John F Crary, MD, PhD

img_John F Crary
PROFESSOR | Pathology, Molecular and Cell Based Medicine
PROFESSOR | Neuroscience
PROFESSOR | Artificial Intelligence and Human Health
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Specialties
Anatomic Pathology and Clinical Pathology
Research Topics
Aging, Alzheimer's Disease, Amyotrophic Lateral Sclerosis, Axonal Growth and Degeneration, Biomechanics/Bioengineering, Brain, Cancer, Cell Biology, Cytoskeleton, Drosophila, Genetics, Microtubules, Molecular Biology, Neuro-degeneration/protection, Neurobiology, Parkinson's Disease, Pathology, RNA, RNA Splicing & Processing, RNA Transport & Localization
Multi-Disciplinary Training Area
Artificial Intelligence and Emerging Technologies in Medicine [AIET], Development Regeneration and Stem Cells [DRS], Disease Mechanisms and Therapeutics (DMT), Genetics and Genomic Sciences [GGS], Neuroscience [NEU]
Crary Laboratory
http://www.crarylab.org/home.html Our research focuses on the molecular neuropathology of neurodegenerative diseases. Using an interdisciplinary approach, we are unravelling the molecular changes occurring in diseases with neurofibrillary tangles composed of the tau protein (i.e., tauopathies). This diverse set of brain diseases includes dementias, such as Alzheimer's disease, movement disorders, such as Parkinson's disease and related conditions, and the long-term sequelae of repetitive traumatic brain injury, or chronic traumatic encephalopathy. We are using histological, genetic, biochemical and molecular approaches to pinpoint underlying molecular and cellular triggers of these diseases. Recently, we have begun to deploy powerful artificial intelligence (machine learning)-based approaches, including computer vision, which is revolutionizing our approach to neurodegeneration. Major ongoing NIH-funded projects in the laboratory include: • Clinical, histopathological, biochemical and genetic studies of primary age-related tauopathy (R01NS095252) • Regulation of tau expression in Alzheimer's disease and aging (R01AG054008) • Clinicopathological studies of chronic traumatic encephalopathy (R01AG062348) • Clinicopathological studies of age-related neurodegeneration in HIV/AIDS (RF1AG060961)
Neuropathology Brain Bank and Research CoRE
https://icahn.mssm.edu/research/portal/resources/deans-cores/neuropathology Research conducted using human post-mortem brain tissue remains a critical component of translational brain research programs. To meet the urgent need for this precious resource, the Neuropathology Brain Bank and Research CoRE was launched as part of the Mount Sinai Strategic Plan in July 2018.

MD, SUNY Downstate Health Sciences University - College of Medicine

Residency, Pathology, Columbia University Irving Medical Center

Fellowship, Neuropathology, Columbia University Irving Medical Center

Publications

Selected Publications

A new AI assisted approach aligns data standards and accelerates interoperability in biomedical research. Rodney Alan Long, Shannon Ballard, Syed Shah, Owen Bianchi, Lietsel Jones, Mathew J. Koretsky, Nicole Kuznetsov, Elise Marsan, Bryant Jen, Philip Chiang, Abhradeep Mukherjee, Cornelis Blauwendraat, Hampton Leonard, Dan Vitale, Kristin Levine, Sara Bandres-Ciga, Paige Jarreau, Patrick Brannelly, Mukta Phatak, Caroline Pantazis, Laurel Screven, Kate Andersh, Alifiya Kapasi, John F. Crary, David Gutman, Brittany N. Dugger, Sarah Biber, Timothy Hohman, Faraz Faghri, Michael Griswold, Lana Sargent, Kendall van Keuren-Jensen, Andrew B. Singleton, Yang Fann, Mike A. Nalls, Hirotaka Iwaki. npj Digital Medicine

Lewy pathology largely absent in prefrontal cortices of Parkinson’s disease patients undergoing deep brain stimulation. Ariela S. Buxbaum Grice, Brian H. Kopell, Klaudia F. Laborc, Anina N. Lund, Renata Gonzalez Chong, Meredith Spadaccia, Gerard Ona, Girish Nadkarni, John F. Crary, Alexander W. Charney, Noam D. Beckmann. npj Parkinson's Disease

Comorbid neuropathologies but not Braak stage influence cognitive impairment in primary age-related tauopathy. Shrishtee Kandoi, Satomi Hiya, Carolina Maldonado-Díaz, Susan K. Rohde, Catarina Bernardes, Francisco C. Almeida, Jorge Samanamud, Kevin Clare, Michael Christian Virata, Cheyanne C. Slocum, Ema Mir, Charles L. White, Elena V. Daoud, Kurt Farrell, John F. Crary, Tiago Gil Oliveira, Mitzi M. Gonzales, Jamie M. Walker, Timothy E. Richardson. Journal of Neuropathology and Experimental Neurology

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Physicians and scientists on the faculty of the Icahn School of Medicine at Mount Sinai often interact with pharmaceutical, device, biotechnology companies, and other outside entities to improve patient care, develop new therapies and achieve scientific breakthroughs. In order to promote an ethical and transparent environment for conducting research, providing clinical care and teaching, Mount Sinai requires that salaried faculty inform the School of their outside financial relationships.

Below are financial relationships with industry reported by Dr. Crary during 2025 and/or 2026. Please note that this information may differ from information posted on corporate sites due to timing or classification differences.

Consulting or Other Professional Services Examples include, but are not limited to, committee participation, data safety monitoring board (DSMB) membership

  • Rainwater Charitable Foundation / Tau Consortium
  • Kissick Family Foundation
  • 10,000 Brains Neuro AI Inc.
  • OADRC External Advisory Committee

Mount Sinai's faculty policies relating to faculty collaboration with industry are posted on our website. Patients may wish to ask their physician about the activities they perform for companies.