Benhur Lee, MD
img_Benhur Lee
PROFESSOR | Microbiology
Research Topics
Antibody Development, Antivirals, Biodefense, Blood-Brain Barrier, Cell Biology, Dendritic Cells, Drug Design and Discovery, Endothelial Cells, Epithelial Cells, Gene Therapy, Gene editing, Glycobiology, HIV/AIDS, Hematopoiesis, Infectious Disease, Interferon, Lung, Lymphocytes, Macrophage, Membranes, Microbiology, Nipah Virus, Nucleus, Paramyxovirus, Protein Trafficking & Sorting, Protein Translation, RNA, RNA Transport & Localization, Retrovirus, Stem Cells, Structural Biology, Systems Biology, Trafficking, Vaccine Development, Viruses and Virology, mRNA Decay
Multi-Disciplinary Training Area
Immunology [IMM], Microbiology [MIC]
Overall Research Themes
How viruses survive, proliferate and transmit within and between hosts is a testament to the past and present evolutionary battles between host and pathogen. The guiding objective of our research is to obtain and translate basic knowledge about viral entry and replication processes to therapeutic or interventional anti-viral strategies. We are particularly interested in developing novel methods, reagents, and therapeutics to address long-standing and intractable problems in our fields of interest. The general theme that unites the studies in our laboratory is Molecular Viral-Host Interactions. We have a special interest in enveloped virus entry and budding mechanisms, with an increasing focus on viruses that cause Emerging Infectious Diseases. We study highly pathogenic viruses, and use Henipaviruses and Human Immunodeficiency Virus-1 (HIV-1) as primary model systems to represent the pathogenesis of acute and chronic viruses, respectively. Henipavirus is a new genus of paramyxovirus discovered around the turn of the millennium. Hendra (HeV) and Nipah (NiV) virus are zoonotic viruses—transmitted to humans from their natural bat reservoir—that cause fatal encephalitis in 40-95% of infected patients. Since 2015, henipaviruses has been on the WHO R&D research blueprint list of the top 8-10 pathogens most likely to cause a pandemic. We discovered the receptors for henipavirus entry (Negrete et al, Nature, 2005; PLoS Pathog, 2006), characterized the structure and function of the receptor binding proteins from divergent henipaviruses recently identified in Africa (Lee et al, PNAS, 2015) and China (Rissanen et al, Nat Commun, 2017), as well as provided evidence that henipavirus spillover events may have already occurred in high-risk populations in Cameroon (Pernet et al, Nat Commun, 2014). We developed robust and efficient reverse genetics systems for all major genera of paramyxoviruses (Beaty et al, mSphere, 2017), so that we can interrogate the biology of paramyxoviruses, including the more common measles (Fulton et al, Cell Reports, 2015), mumps and parainfluenza viruses, on a genome-wide scale (Satoshi et al, in submission, 2019). Currently, we are leveraging our long-standing collaboration with Thomas Bowden’s structural biology group (Oxford University) and Mount Sinai’s unique arrangement with REGENERON (VelocImmune® mice) to develop fully humanized broadly neutralizing antibodies against the ever-increasing spectrum of divergent henipaviruses and other paramyxoviruses that still pose a threat to global public health. Paramyxoviruses are negative sense RNA viruses that replicate entirely in the cytoplasm. Their matrix proteins coordinate the assembly and budding of virions at the plasma membranes. In a discovery that exemplifies the motto of our lab that— “viruses are the best cell biologists”—we discovered that henipavirus matrix proteins contain functional nuclear localization and nuclear export signals. And that an ubiquitin-regulated nuclear sojourn is required for the proper targeting of matrix proteins to the secretory pathway and plasma membrane domains that serve as sites of virus assembly and budding (Wang et al, PLoS Pathog, 2010). The nuclear import and export signals, as well as the ubiquitin-regulated nuclear transit, are conserved across several genera of paramyxovirus (Pentecost et al, PLoS Pathog, 2015). The matrix interactomes of at least seven paramyxoviruses representing the major genera of paramyxoviruses have revealed a treasure of biologically interesting partners that hints at many non-structural functions of paramyxoviral matrix proteins, including the unexpected involvement of matrix in antagonizing Type I IFN responses (Bharaj et al, PLoS Pathog, 2016). HIV-1, the causative agent of AIDS, is also a zoonotic virus—transmitted from its natural chimpanzee reservoir—that exploded on the world scene in the early 1980s. HIV/AIDS remains a global pandemic. However, our increasing understanding of HIV/AIDS pathogenesis, and the availability of potent combinations of anti-HIV drugs, perhaps marks “the end of the beginning” in our fight to bring this pandemic under control. In addition to our past contributions, our current research in this area involves developing SeV vectors for highly efficient gene editing in primary human hematopoietic stem cells as part of the international “HIV cure” efforts (Park et al, Mol Ther- Meth Clin Dev, 2016 and WO2017/223330A1-WIPO (PCT)). Our SeV vector Is modular and deliver their transgenes transiently. Thus, we can incorporate all the latest advances in CRISPR-Cas technology in order to achieve highly efficient genome or epigenome modifications in relevant primary human cells such as neurons, astrocytes, hematopoietic stem cells, monocytes, dendritic cells, lung epithelial cells, iPSC, etc.


Culpepper Biomedical Scholar Award (2002-2005)

Rockefeller Brothers Fund

Dolph Adams Award 2006

Journal of Leukocyte Biology


Selected Publications

Metagenomics-enabled reverse-genetics assembly and characterization of myotis bat morbillivirus. Satoshi Ikegame, Jillian C. Carmichael, Heather Wells, Robert L. Furler O’Brien, Joshua A. Acklin, Hsin Ping Chiu, Kasopefoluwa Y. Oguntuyo, Robert M. Cox, Aum R. Patel, Shreyas Kowdle, Christian S. Stevens, Miles Eckley, Shijun Zhan, Jean K. Lim, Ethan C. Veit, Matthew J. Evans, Takao Hashiguchi, Edison Durigon, Tony Schountz, Jonathan H. Epstein, Richard K. Plemper, Peter Daszak, Simon J. Anthony, Benhur Lee. Nature Microbiology

Virology under the Microscope-a Call for Rational Discourse. Felicia Goodrum, Anice C. Lowen, Seema Lakdawala, James Alwine, Arturo Casadevall, Michael J. Imperiale, Walter Atwood, Daphne Avgousti, Joel Baines, Bruce Banfield, Lawrence Banks, Sumita Bhaduri-McIntosh, Deepta Bhattacharya, Daniel Blanco-Melo, David Bloom, Adrianus Boon, Steeve Boulant, Curtis Brandt, Andrew Broadbent, Christopher Brooke, Craig Cameron, Samuel Campos, Patrizia Caposio, Gary Chan, Anna Cliffe, John Coffin, Kathleen Collins, Blossom Damania, Matthew Daugherty, Kari Debbink, James DeCaprio, Terence Dermody, Jimmy Dikeakos, Daniel DiMaio, Rhoel Dinglasan, W. Paul Duprex, Rebecca Dutch, Nels Elde, Michael Emerman, Lynn Enquist, Bentley Fane, Ana Fernandez-Sesma, Michelle Flenniken, Lori Frappier, Matthew Frieman, Klaus Frueh, Michaela Gack, Marta Gaglia, Tom Gallagher, Denise Galloway, Adolfo García-Sastre, Adam Geballe, Britt Glaunsinger, Stephen Goff, Alexander Greninger, Meaghan Hancock, Eva Harris, Nicholas Heaton, Mark Heise, Ekaterina Heldwein, Brenda Hogue, Stacy Horner, Edward Hutchinson, Joseph Hyser, William Jackson, Robert Kalejta, Jeremy Kamil, Stephanie Karst, Frank Kirchhoff, David Knipe, Timothy Kowalik, Michael Lagunoff, Laimonis Laimins, Ryan Langlois, Adam Lauring, Benhur Lee, David Leib, Shan Lu Liu, Richard Longnecker, Carolina Lopez, Micah Luftig, Jennifer Lund, Balaji Manicassamy, Grant McFadden, Michael McIntosh, Andrew Mehle, W. Allen Miller, Ian Mohr, Cary Moody, Nathaniel Moorman, Anne Moscona, Bryan Mounce, Joshua Munger, Karl Münger, Eain Murphy, Mojgan Naghavi, Jay Nelson, Christopher Neufeldt, Janko Nikolich, Christine O'Connor, Akira Ono, Walter Orenstein, David Ornelles, Jing Hsiung Ou, John Parker, Colin Parrish, Andrew Pekosz, Philip Pellett, Julie Pfeiffer, Richard Plemper, Stephen Polyak, John Purdy, Dohun Pyeon, Miguel Quinones-Mateu, Rolf Renne, Charles Rice, John Schoggins, Richard Roller, Charles Russell, Rozanne Sandri-Goldin, Martin Sapp, Luis Schang, Scott Schmid, Stacey Schultz-Cherry, Bert Semler, Thomas Shenk, Guido Silvestri, Viviana Simon, Gregory Smith, Jason Smith, Katherine Spindler, Megan Stanifer, Kanta Subbarao, Wesley Sundquist, Mehul Suthar, Troy Sutton, Andrew Tai, Vera Tarakanova, Benjamin tenOever, Scott Tibbetts, Stephen Tompkins, Zsolt Toth, Koenraad van Doorslaer, Marco Vignuzzi, Nicholas Wallace, Derek Walsh, Michael Weekes, Jason Weinberg, Matthew Weitzman, Sandra Weller, Sean Whelan, Elizabeth White, Bryan Williams, Christiane Wobus, Scott Wong, Andrew Yurochko. mSphere

Paramyxoviruses from bats: changes in receptor specificity and their role in host adaptation. Griffin D. Haas, Benhur Lee. Current Opinion in Virology

View All Publications

Physicians and scientists on the faculty of the Icahn School of Medicine at Mount Sinai often interact with pharmaceutical, device and biotechnology companies to improve patient care, develop new therapies and achieve scientific breakthroughs. In order to promote an ethical and transparent environment for conducting research, providing clinical care and teaching, Mount Sinai requires that salaried faculty inform the School of their relationships with such companies.

Below are financial relationships with industry reported by Dr. Lee during 2022 and/or 2023. Please note that this information may differ from information posted on corporate sites due to timing or classification differences.


  • Sana Biotechnology, Inc.

Royalty Payments:

  • Sana Biotechnology, Inc.

Mount Sinai's faculty policies relating to faculty collaboration with industry are posted on our website. Patients may wish to ask their physician about the activities they perform for companies.